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sickle-software [2016/07/25 10:09] (current)
joguya created
Line 1: Line 1:
 +====== sickle ======
  
 +sickle is a windowed adaptive trimming tool for FASTQ files using quality
 +
 +===== Information =====
 +
 +  * Version: 1.33
 +  * Added: July, 2016
 +  * Link: https://​github.com/​najoshi/​sickle
 +
 +===== Usage =====
 +
 +See which versions of sickle are available:
 +<​code>​$ module avail sickle</​code>​
 +
 +Load sickle
 +<​code>​$ module load sickle/​1.33</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp/
 +$ wget https://​github.com/​najoshi/​sickle/​archive/​v1.33.tar.gz
 +$ tar -xf v1.33.tar.gz
 +$ cd sickle-1.33/​
 +$ scl enable devtoolset-2 bash
 +$ make
 +$ sudo mkdir -p /​export/​apps/​sickle/​1.33/​
 +$ sudo cp sickle /​export/​apps/​sickle/​1.33/​
 +</​code>​
sickle-software.txt · Last modified: 2016/07/25 10:09 by joguya