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shasta-software [2019/09/04 00:25]
aorth created
shasta-software [2020/03/15 14:19] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.2.0+  * Version: 0.4.0
   * Added: September, 2019   * Added: September, 2019
 +  * Updated: March, 2020
   * Link: https://​github.com/​chanzuckerberg/​shasta   * Link: https://​github.com/​chanzuckerberg/​shasta
  
Line 14: Line 15:
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<​code>​$ module load shasta/0.2.0+<​code>​$ module load shasta/0.4.0
 $ shasta</​code>​ $ shasta</​code>​
 +
 +**Note:** Please use the ''​%%--threads%%''​ option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://​chanzuckerberg.github.io/​shasta/​CommandLineOptions.html|shasta documentation for more information]]. ​
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ sudo mkdir -p /​export/​apps/​shasta/​0.2.0/bin +<​code>​$ cd /tmp 
-$ sudo chown aorth /​export/​apps/​shasta/​0.2.0/​bin +$ sudo mkdir -p /​export/​apps/​shasta/​0.4.0/bin 
-wget https://​github.com/​chanzuckerberg/​shasta/​releases/​download/​0.2.0/​shasta-Linux-0.2.0 -O /​export/​apps/​shasta/​0.2.0/​bin/​shasta +$ sudo wget https://​github.com/​chanzuckerberg/​shasta/​releases/​download/​0.4.0/​shasta-Linux-0.4.0 -O /​export/​apps/​shasta/​0.4.0/​bin/​shasta 
-$ chmod +x /​export/​apps/​shasta/​0.2.0/​bin/​shasta +sudo chmod +x /​export/​apps/​shasta/​0.4.0/​bin/​shasta</​code>​
-$ sudo chown root:root /​export/​apps/​shasta/​0.2.0/​bin/​shasta +
-</​code>​+
shasta-software.1567545956.txt.gz · Last modified: 2019/09/04 00:25 by aorth