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shasta-software [2019/09/04 00:25] (current)
aorth created
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 +====== shasta ======
 +De novo assembly from Oxford Nanopore reads.
  
 +===== Information =====
 +
 +  * Version: 0.2.0
 +  * Added: September, 2019
 +  * Link: https://​github.com/​chanzuckerberg/​shasta
 +
 +===== Usage =====
 +
 +See versions of shasta which are available:
 +<​code>​$ module avail shasta</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load shasta/​0.2.0
 +$ shasta</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ sudo mkdir -p /​export/​apps/​shasta/​0.2.0/​bin
 +$ sudo chown aorth /​export/​apps/​shasta/​0.2.0/​bin
 +$ wget https://​github.com/​chanzuckerberg/​shasta/​releases/​download/​0.2.0/​shasta-Linux-0.2.0 -O /​export/​apps/​shasta/​0.2.0/​bin/​shasta
 +$ chmod +x /​export/​apps/​shasta/​0.2.0/​bin/​shasta
 +$ sudo chown root:root /​export/​apps/​shasta/​0.2.0/​bin/​shasta
 +</​code>​
shasta-software.txt · Last modified: 2019/09/04 00:25 by aorth