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shasta-software

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shasta

De novo assembly from Oxford Nanopore reads.

Information

Usage

See versions of shasta which are available:

$ module avail shasta

Load one version into your environment and run it:

$ module load shasta/0.4.0
$ shasta

Note: Please use the --threads option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the shasta documentation for more information.

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ sudo mkdir -p /export/apps/shasta/0.4.0/bin
$ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta
$ sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta
shasta-software.txt · Last modified: 2020/03/15 14:19 by aorth