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shasta-software

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shasta

De novo assembly from Oxford Nanopore reads.

Information

Usage

See versions of shasta which are available:

$ module avail shasta

Load one version into your environment and run it:

$ module load shasta/0.2.0
$ shasta

Installation

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/shasta/0.2.0/bin
$ sudo chown aorth /export/apps/shasta/0.2.0/bin
$ wget https://github.com/chanzuckerberg/shasta/releases/download/0.2.0/shasta-Linux-0.2.0 -O /export/apps/shasta/0.2.0/bin/shasta
$ chmod +x /export/apps/shasta/0.2.0/bin/shasta
$ sudo chown root:root /export/apps/shasta/0.2.0/bin/shasta
shasta-software.txt · Last modified: 2019/09/04 00:25 by aorth