User Tools

Site Tools


seqtk-software

Table of Contents

seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format.

Information

Usage

See versions of seqtk which are available:

$ module avail seqtk

Load one version into your environment and run it:

$ module load seqtk/1.2-r102
$ seqtk

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/lh3/seqtk.git
$ cd seqtk
$ make
$ sudo mkdir -p /export/apps/seqtk/1.2-r102/bin
$ sudo cp seqtk /export/apps/seqtk/1.2-r102/bin
seqtk-software.txt · Last modified: 2018/02/21 10:21 by aorth