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seqkit-software [2018/02/21 10:20]
aorth created
seqkit-software [2019/11/19 16:04] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.7.2+  * Version: 0.11.0
   * Added: February, 2018   * Added: February, 2018
 +  * Updated: November, 2019
   * Link: http://​bioinf.shenwei.me/​seqkit   * Link: http://​bioinf.shenwei.me/​seqkit
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<​code>​$ module load seqkit/0.7.2+<​code>​$ module load seqkit/0.11.0
 $ seqkit</​code>​ $ seqkit</​code>​
 +
 +**N.B.**: Please use the ''​-j''​ option to set the number of CPU threads used by seqkit to be the same as the number of CPUs requested in your SLURM SBATCH parameters.
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ wget https://​github.com/​shenwei356/​seqkit/​releases/​download/​v0.7.2/​seqkit_linux_amd64.tar.gz+<​code>​$ cd /tmp 
 +$ wget https://​github.com/​shenwei356/​seqkit/​releases/​download/​v0.11.0/​seqkit_linux_amd64.tar.gz
 $ tar xf seqkit_linux_amd64.tar.gz $ tar xf seqkit_linux_amd64.tar.gz
-$ sudo mkdir -p /​export/​apps/​seqkit/​0.7.2/bin +$ sudo mkdir -p /​export/​apps/​seqkit/​0.11.0/bin 
-$ sudo cp seqkit /​export/​apps/​seqkit/​0.7.2/​bin</​code>​+$ sudo cp seqkit /​export/​apps/​seqkit/​0.11.0/​bin</​code>​
seqkit-software.1519197651.txt.gz · Last modified: 2018/02/21 10:20 by aorth