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scythe-software

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scythe

Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.

Information

Usage

See versions of scythe which are available

$ module avail scythe

Load and run scythe

$ module load scythe
$ scythe

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone git@github.com:vsbuffalo/scythe.git
$ cd scythe
$ scl enable devtoolset-2 bash
$ CC=clang make all
$ sudo mkdir -p /export/apps/scythe/0.994-beta
$ sudo cp scythe /export/apps/scythe/0.994-beta
scythe-software.txt · Last modified: 2015/06/24 12:00 by aorth