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salmon-software [2016/11/03 15:32]
joguya [Installation]
salmon-software [2018/03/27 17:21] (current)
aorth
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 ====== salmon ====== ====== salmon ======
- 
 Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify. Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 0.7.2+  * Latest Version: 0.9.1
   * Added: September, 2016   * Added: September, 2016
-  * Link: http://​salmon.readthedocs.io/​en/​latest/​salmon.html+  ​* Updated: March, 2018 
 +  ​* Link: https://​salmon.readthedocs.io/​en/​latest/​salmon.html
  
 ===== Usage ===== ===== Usage =====
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 </​code>​ </​code>​
  
-Load salmon +Load one version of salmon ​into your environment and run it: 
-<​code>​$ module load salmon/0.7.2</​code>​+<​code>​$ module load salmon/0.9.
 +$ salmon</​code>​
  
 ===== Installation ====== ===== Installation ======
- 
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +$ wget https://​github.com/​COMBINE-lab/​salmon/​releases/​download/​v0.9.1/Salmon-0.9.1_linux_x86_64.tar.gz 
-$ wget https://​github.com/​COMBINE-lab/​salmon/​releases/​download/​v0.7.2/Salmon-0.7.2_linux_x86_64.tar.gz +$ tar xf Salmon-0.9.1_linux_x86_64.tar.gz 
-$ tar -xvf Salmon-0.7.2_linux_x86_64.tar.gz +$ sudo cp -r Salmon-latest_linux_x86_64 ​/​export/​apps/​salmon/​0.9.1</​code>​
-$ sudo mkdir -p /​export/​apps/​salmon/​0.7.2/​ +
-$ sudo cp -r /​export/​apps/​salmon/​0.7.2/ +
-</​code>​+
salmon-software.txt · Last modified: 2018/03/27 17:21 by aorth