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salmon-software

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salmon

Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.

Information

Usage

See which versions of salmon are available:

$ module avail salmon

Load one version of salmon into your environment and run it:

$ module load salmon/0.9.1
$ salmon

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/COMBINE-lab/salmon/releases/download/v0.9.1/Salmon-0.9.1_linux_x86_64.tar.gz
$ tar xf Salmon-0.9.1_linux_x86_64.tar.gz
$ sudo cp -r Salmon-latest_linux_x86_64 /export/apps/salmon/0.9.1
salmon-software.txt · Last modified: 2018/03/27 17:21 by aorth