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sailfish-software [2016/03/24 16:51] (current)
joguya created
Line 1: Line 1:
 +====== Sailfish ======
  
 +Rapid Mapping-based Isoform Quantification from RNA-Seq Reads.
 +
 +===== Information =====
 +
 +  * Version: 0.9.2
 +  * Added: March, 2016
 +  * Link: http://​www.cs.cmu.edu/​~ckingsf/​software/​sailfish
 +
 +===== Usage =====
 +
 +See which versions of sailfish are available:
 +<​code>​$ module avail sailfish
 +</​code>​
 +
 +Load sailfish
 +<​code>​$ module load sailfish/​0.9.2</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget https://​github.com/​kingsfordgroup/​sailfish/​archive/​v0.9.2.tar.gz
 +$ tar -xvf v0.9.2.tar.gz
 +$ cd sailfish-0.9.2/​
 +$ scl enable devtoolset-2 bash
 +$ sudo mkdir -p /​export/​apps/​sailfish/​0.9.2
 +$ sudo chown joguya:​joguya /​export/​apps/​sailfish/​0.9.2
 +$ cmake -DCMAKE_INSTALL_PREFIX=/​export/​apps/​sailfish/​0.9.2 -DFETCH_BOOST=TRUE
 +$ make
 +$ make install
 +$ sudo chown -R root:root /​export/​apps/​sailfish/​0.9.2
 +</​code>​
sailfish-software.txt · Last modified: 2016/03/24 16:51 by joguya