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rsem-software

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RSEM

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.

Usage

Show all available versions:

$ module avail RSEM

Load one version into your environment and run it:

$ module load RSEM/1.3.1

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/deweylab/RSEM/archive/v1.3.1.tar.gz
$ tar xf v1.3.1.tar.gz
$ cd RSEM-1.3.1
$ sudo yum install gcc-c++
$ make
$ sudo mkdir -p /export/apps/RSEM/1.3.1
$ sudo chown aorth /export/apps/RSEM/1.3.1
$ make prefix=/export/apps/RSEM/1.3.1 install
$ sudo chown -R root:root /export/apps/RSEM/1.3.1
rsem-software.1542528046.txt.gz · Last modified: 2018/11/18 11:00 by aorth