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RSEM(RNA-Seq by Expectation-Maximization) is an accurate quantification of gene and isoform expression from RNA-Seq data.
module avail RSEM
module load RSEM/1.2.21
wget http://deweylab.biostat.wisc.edu/rsem/src/rsem-1.2.21.tar.gz tar -xvf rsem-1.2.21.tar.gz cd rsem-1.2.21 scl enable devtoolset-2 bash module load bowtie2 make sudo mkdir /export/apps/RSEM/1.2.21/ sudo cp -r . /export/apps/RSEM/1.2.21/