module avail RSEM

module load RSEM/1.24

git clone https://github.com/bli25wisc/RSEM.git
cd RSEM
git checkout v1.2.9
module load bowtie2/2.2.3 bowtie/1.1.1
make
sudo mkdir -p /export/apps/RSEM/1.2.9/
sudo cp -r . /export/apps/RSEM/1.2.9/

#%Module1.0
#####################################################################
##
## RSEM Modulefile
## By James Oguya, j.oguya@cgiar.org
## February, 2015
##

set appname         RSEM
set version         1.2.9
set prefix          /export/apps/${appname}/${version}
set exec_prefix     ${prefix}
set url "http://deweylab.biostat.wisc.edu/rsem/"
set msg "RSEM(RNA-Seq by Expectation-Maximization): accurate quantification of gene and isoform expression from RNA-Seq data.\nRSEM Official Site: $url\n"

module-whatis "$msg"

proc ModulesHelp { } {
    puts stderr "$msg"
}

conflict        RSEM

prepend-path    PATH    ${exec_prefix}

# load RSEM dependencies - bowtie2/2.2.3, bowtie/1.1.1, R/3.1.0
if { ! [is-loaded bowtie2/2.2.3] } {
    module load bowtie2/2.2.3
}

if { ![is-loaded bowtie/1.1.1] } {
    module load bowtie/1.1.1
}

if { ![is-loaded R/3.1.0] } {
    module load R/3.1.0
}

ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=modules