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rsem-software

RSEM

RSEM(RNA-Seq by Expectation-Maximization) is an accurate quantification of gene and isoform expression from RNA-Seq data.

Usage

  • Show all available versions of RSEM
    module avail RSEM
  • Load RSEM module:
    module load RSEM/1.2.21

Installation

  • Download & build/compile it
    wget http://deweylab.biostat.wisc.edu/rsem/src/rsem-1.2.21.tar.gz
    tar -xvf rsem-1.2.21.tar.gz 
    cd rsem-1.2.21
    scl enable devtoolset-2 bash
    module load bowtie2
    make
    sudo mkdir /export/apps/RSEM/1.2.21/
    sudo cp -r . /export/apps/RSEM/1.2.21/
rsem-software.txt · Last modified: 2015/07/23 17:00 by joguya