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rrnaselector-software [2015/12/17 13:09] (current)
joguya created
Line 1: Line 1:
 +====== rRNASelector ======
 +rRNASelector selects rRNA genes from metagenomic and metatranscriptomic sequences.
 +
 +===== Information =====
 +
 +  * Version: 1.1
 +  * Added: December, 2015
 +  * Link: http://www.ezbiocloud.net/sw/rrnaselector
 +
 +===== Usage =====
 +
 +See versions of rRNASelector which are available:
 +<code>$ module avail rrnaselector</code>
 +
 +Load and run rRNASelector:
 +<code>$ module load rrnaselector/1.1
 +$ rnaselector</code>
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:
 +
 +<code>$ cd /tmp
 +$ wget "http://www.ezbiocloud.net/mod_download_sw.jsp?key=rrnaselector&fn=rRNASelector_for_linux.zip" -O rRNASelector_for_linux.zip
 +$ unzip  rRNASelector_for_linux.zip
 +$ sudo mkdir -p /export/apps/rrnaselector/1.1/
 +$ sudo cp -r . /export/apps/rrnaselector/1.1/
 +</code>
 +
 +I created a wrapper shell script named ''rnaselector'' to run RNASelector, otherwise, you'll have to specify the path to ''RNASelector.jar'', which is not always friendly & easy to most users.
 +''/export/apps/rrnaselector/1.1/rnaselector''
 +<code>
 +#!/usr/bin/env bash
 +
 +readonly PREFIX=$(dirname $0)
 +java -jar $PREFIX/RNAselector.jar $*
 +</code>
  
rrnaselector-software.txt · Last modified: 2015/12/17 13:09 by joguya