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rrnaselector-software [2015/12/17 16:09] (current)
joguya created
Line 1: Line 1:
 +====== rRNASelector ======
 +rRNASelector selects rRNA genes from metagenomic and metatranscriptomic sequences.
 +
 +===== Information =====
 +
 +  * Version: 1.1
 +  * Added: December, 2015
 +  * Link: http://​www.ezbiocloud.net/​sw/​rrnaselector
 +
 +===== Usage =====
 +
 +See versions of rRNASelector which are available:
 +<​code>​$ module avail rrnaselector</​code>​
 +
 +Load and run rRNASelector:​
 +<​code>​$ module load rrnaselector/​1.1
 +$ rnaselector</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget "​http://​www.ezbiocloud.net/​mod_download_sw.jsp?​key=rrnaselector&​fn=rRNASelector_for_linux.zip"​ -O rRNASelector_for_linux.zip
 +$ unzip  rRNASelector_for_linux.zip
 +$ sudo mkdir -p /​export/​apps/​rrnaselector/​1.1/​
 +$ sudo cp -r . /​export/​apps/​rrnaselector/​1.1/​
 +</​code>​
 +
 +I created a wrapper shell script named ''​rnaselector''​ to run RNASelector,​ otherwise, you'll have to specify the path to ''​RNASelector.jar'',​ which is not always friendly & easy to most users.
 +''/​export/​apps/​rrnaselector/​1.1/​rnaselector''​
 +<​code>​
 +#​!/​usr/​bin/​env bash
 +
 +readonly PREFIX=$(dirname $0)
 +java -jar $PREFIX/​RNAselector.jar $*
 +</​code>​
  
rrnaselector-software.txt · Last modified: 2015/12/17 16:09 by joguya