User Tools

Site Tools


rmblast-software

rmblast

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program "rmblastn" for use with RepeatMasker and RepeatModeler.

Information

Usage

See versions of rmblast which are available:

$ module avail rmblast

Load one version into your environment and run it:

$ module load rmblast/2.10.0
$ blastn

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://www.repeatmasker.org/rmblast-2.10.0+-x64-linux.tar.gz
$ tar xf rmblast-2.10.0+-x64-linux.tar.gz
$ sudo cp -r rmblast-2.10.0 /export/apps/rmblast/2.10.0
rmblast-software.txt · Last modified: 2020/11/01 15:01 by aorth