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rdp-classifier-software [2015/09/15 12:37] (current)
joguya created
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 +====== RDP Classifier ======
 +RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.
 +
 +===== Information =====
 +
 +  * Version: 2.11
 +  * Added: September, 2015
 +  * Link: http://​rdp.cme.msu.edu/​
 +
 +===== Usage =====
 +
 +See versions of RDP Classifier which are available:
 +<​code>​$ module avail rdp-classifier</​code>​
 +
 +Load and run RDP Classifier:
 +<​code>​$ module load rdp-classifier/​2.11
 +$ rdp-classifier</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget "​http://​downloads.sourceforge.net/​project/​rdp-classifier/​rdp-classifier/​rdp_classifier_2.11.zip?​r=&​ts=1442297515&​use_mirror=liquidtelecom"​ -O rdp_classifier_2.11.zip
 +$ unzip rdp_classifier_2.11.zip
 +$ cd rdp_classifier_2.11
 +$ ant jar
 +$ sudo mkdir -p /​export/​apps/​rdp-classifier/​2.11
 +$ sudo cp -rv . /​export/​apps/​rdp-classifier/​2.11/​
 +</​code>​
 +
 +I created a wrapper shell script named ''​rdp-classifier''​ to run RDP Classifier, otherwise, you have to specify a path to classifier.jar — ''​java -jar ..''​ —  which is unfriendly:
 +''/​export/​apps/​rdp-classifier/​2.11/​rdp-classifier''​
 +<​code>​
 +#​!/​usr/​bin/​env bash
 +
 +readonly PREFIX=$(dirname $0)
 +java -jar $PREFIX/​dist/​classifier.jar $*
 +</​code>​
  
rdp-classifier-software.txt · Last modified: 2015/09/15 12:37 by joguya