User Tools

Site Tools


rdp-classifier-software

RDP Classifier

RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.

Information

Usage

See versions of RDP Classifier which are available:

$ module avail rdp-classifier

Load and run RDP Classifier:

$ module load rdp-classifier/2.11
$ rdp-classifier

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget "http://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip?r=&ts=1442297515&use_mirror=liquidtelecom" -O rdp_classifier_2.11.zip
$ unzip rdp_classifier_2.11.zip
$ cd rdp_classifier_2.11
$ ant jar
$ sudo mkdir -p /export/apps/rdp-classifier/2.11
$ sudo cp -rv . /export/apps/rdp-classifier/2.11/

I created a wrapper shell script named rdp-classifier to run RDP Classifier, otherwise, you have to specify a path to classifier.jar — java -jar .. — which is unfriendly: /export/apps/rdp-classifier/2.11/rdp-classifier

#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)
java -jar $PREFIX/dist/classifier.jar $*
rdp-classifier-software.txt · Last modified: 2015/09/15 12:37 by joguya