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Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard.



See versions of ray which are available

module avail ray

See the built-in help

Ray -help | less


Notes from the sysadmin during installation:

cd /tmp
git clone
git clone
cd ray
git checkout v2.3.1
scl enable devtoolset-1.1 bash
module load openmpi/1.8.2
make PREFIX=/export/apps/ray/2.3.1 HAVE_LIBZ=y HAVE_LIBBZ2=y
strip Ray
sudo mkdir -p /export/apps/ray/2.3.1
sudo chown -R aorth:aorth /export/apps/ray/2.3.1
make install
sudo chown -R root:root /export/apps/ray/2.3.1
ray-software.1409581389.txt.gz · Last modified: 2014/09/01 14:23 by aorth