• Version: 8.0.23
• Added: June, 2011
• Updated: May 27, 2014
• Link: https://github.com/stamatak/standard-RAxML

module avail RAxML

Notes from the sysadmin during installation:

git clone https://github.com/stamatak/standard-RAxML.git
cd standard-RAxML
scl enable devtoolset-1.1 bash
git checkout v8.0.23
make -f Makefile.AVX.gcc
rm *.o
make -f Makefile.AVX.PTHREADS.gcc
sudo mkdir -p /export/apps/RAxML/8.0.23/bin
sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/

Information:

• Version: 8.1.9
• Added: December, 2014
• Link: https://github.com/stamatak/standard-RAxML/releases/tag/v8.1.9

• Download pandaseq 2.8.1, create version specific dir in /export/apps/pandaseq/, compile & install it.

  git clone https://github.com/stamatak/standard-RAxML.git
  cd standard-RAxML
  scl enable devtoolset-1.1 bash
  git checkout v8.1.9
  make -f Makefile.gcc
  rm *.o
  make -f Makefile.SSE3.gcc
  rm *.o
  make -f Makefile.AVX.gcc
  rm *.o
  make -f Makefile.PTHREADS.gcc
  rm *.o
  make -f Makefile.AVX.PTHREADS.gcc
  rm *.o
  make -f Makefile.SSE3.PTHREADS.gcc
  rm *.o
  sudo mkdir -p /export/apps/RAxML/8.1.9/bin
  sudo cp raxmlHPC* /export/apps/RAxML/8.1.9/bin/

• RAxML/8.1.9 module file:

  #%Module1.0
  #####################################################################
  ##
  ## RAxML Modulefile
  ## by James Oguya, <j.oguya@cgiar.org>
  ## December, 2014
  ##
  
  set     appname         RAxML
  set     version         8.1.9
  set     prefix          /export/apps/${appname}/${version}
  set     exec_prefix     ${prefix}/bin
  
  conflict    RAxML
  
  prepend-path    PATH            ${exec_prefix}