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raxml-software

RAxML

RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees.

Usage

  • Show all available versions of RAxML
    module avail RAxML
  • Load RAxML module:
    module load RAxML/8.2.0

Installation

  • Notes from the sysadmin during installation:
    wget https://github.com/stamatak/standard-RAxML/archive/v8.2.0.tar.gz
    tar -xvf v8.2.0.tar.gz
    cd standard-RAxML-8.2.0/
    make -f Makefile.AVX.gcc
    rm *.o
    make -f Makefile.AVX.PTHREADS.gcc
    rm *.o
    module load openmpi/1.8.2
    make -f Makefile.MPI.gcc
    rm *.o
    sudo mkdir -p /export/apps/RAxML/8.2.0/bin
    sudo cp -v raxmlHPC* /export/apps/RAxML/8.2.0/bin/
raxml-software.txt · Last modified: 2015/07/27 10:18 by joguya