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r-software [2019/10/27 17:02]
aorth
r-software [2019/10/27 18:44] (current)
aorth
Line 42: Line 42:
 $ make install</​code>​ $ make install</​code>​
  
-Then install some common libraries used by our users (to save spaceoverhead from tens of thousands of header ​and library ​filesand users'​s time):+Then install some common libraries used by our users because some of them are quite complicatedand installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways:
  
 +<​code>​$ export LD_LIBRARY_PATH=/​export/​apps/​gdal/​2.4.2/​lib
 +> install.packages("​BiocManager",​ repos="​https://​cran.r-project.org"​)
 +> install.packages("​sf",​ repo="​https://​cloud.r-project.org",​ configure.args=c(sf = "​--with-gdal-config=/​export/​apps/​gdal/​2.4.2/​bin/​gdal-config"​))
 +> install.packages("​poppr",​ repos="​https://​cran.r-project.org"​)
 +> install.packages("​vcfR",​ repos="​https://​cran.r-project.org"​)</​code>​
r-software.1572184939.txt.gz · Last modified: 2019/10/27 17:02 by aorth