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r-software [2019/10/27 15:44]
aorth
r-software [2020/05/12 18:20]
aorth
Line 30: Line 30:
 $ cd R-3.6.1 $ cd R-3.6.1
 # install packages to enable capabilities in R # install packages to enable capabilities in R
-$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel+$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers
 # install a newer compiler from Red Hat software collections # install a newer compiler from Red Hat software collections
 $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++
Line 45: Line 45:
  
 <code>$ export LD_LIBRARY_PATH=/export/apps/gdal/2.4.2/lib <code>$ export LD_LIBRARY_PATH=/export/apps/gdal/2.4.2/lib
 +$ R
 > install.packages("BiocManager", repos="https://cran.r-project.org") > install.packages("BiocManager", repos="https://cran.r-project.org")
 > install.packages("sf", repo="https://cloud.r-project.org", configure.args=c(sf = "--with-gdal-config=/export/apps/gdal/2.4.2/bin/gdal-config")) > install.packages("sf", repo="https://cloud.r-project.org", configure.args=c(sf = "--with-gdal-config=/export/apps/gdal/2.4.2/bin/gdal-config"))
 > install.packages("poppr", repos="https://cran.r-project.org") > install.packages("poppr", repos="https://cran.r-project.org")
 > install.packages("vcfR", repos="https://cran.r-project.org")</code> > install.packages("vcfR", repos="https://cran.r-project.org")</code>
r-software.txt · Last modified: 2020/05/12 18:20 by aorth