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r-software [2019/10/27 14:02]
aorth
r-software [2020/05/12 13:38]
aorth
Line 30: Line 30:
 $ cd R-3.6.1 $ cd R-3.6.1
 # install packages to enable capabilities in R # install packages to enable capabilities in R
-$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel+$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers
 # install a newer compiler from Red Hat software collections # install a newer compiler from Red Hat software collections
 $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++
Line 42: Line 42:
 $ make install</code> $ make install</code>
  
-Then install some common libraries used by our users (to save spaceoverhead from tens of thousands of header and library filesand users's time):+Then install some common libraries used by our users because some of them are quite complicatedand installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways:
  
 +<code>$ export LD_LIBRARY_PATH=/export/apps/gdal/2.4.2/lib
 +> install.packages("BiocManager", repos="https://cran.r-project.org")
 +> install.packages("sf", repo="https://cloud.r-project.org", configure.args=c(sf = "--with-gdal-config=/export/apps/gdal/2.4.2/bin/gdal-config"))
 +> install.packages("poppr", repos="https://cran.r-project.org")
 +> install.packages("vcfR", repos="https://cran.r-project.org")</code>
r-software.txt · Last modified: 2020/05/12 18:20 by aorth