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r-software [2019/01/25 14:29]
aorth [Information]
r-software [2019/08/08 23:01]
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 3.5.2+  * Version: 3.6 (3.6.1)
   * Added: February, 2015   * Added: February, 2015
-  * Updated: ​January, 2019+  * Updated: ​August, 2019
   * Link: https://​www.r-project.org/​   * Link: https://​www.r-project.org/​
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<​code>​$ module load R/3.5+<​code>​$ module load R/3.6
 $ R</​code>​ $ R</​code>​
  
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 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation:​+Notes from the sysadmin during installation
 + 
 +First, compile the main R application with GCC 7 from Red Hat's ''​devtoolset-7''​ software collection:
  
 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget https://​cran.r-project.org/​src/​base/​R-3/​R-3.5.2.tar.gz +$ wget https://​cran.r-project.org/​src/​base/​R-3/​R-3.6.1.tar.gz 
-$ tar xf R-3.5.2.tar.gz +$ tar xf R-3.6.1.tar.gz 
-$ cd R-3.5.2 +$ cd R-3.6.
-$ sudo yum install ​gcc-gfortran gcc-c++ ​libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel +# install packages to enable capabilities in R 
-$ ./configure --enable-R-shlib --prefix=/​export/​apps/​R/​3.5+$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel 
 +# install a newer compiler from Red Hat software collections 
 +$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ 
 +$ scl enable devtoolset-7 bash 
 +$ ./configure --enable-R-shlib --prefix=/​export/​apps/​R/​3.6
 $ make -j4 $ make -j4
-$ sudo mkdir -p /​export/​apps/​R/​3.5 +$ sudo mkdir -p /​export/​apps/​R/​3.6 
-$ sudo chown aorth:aorth /​export/​apps/​R/​3.5 +$ sudo chown aorth /​export/​apps/​R/​3.6 
-$ make install +$ make install</​code>​ 
-$ sudo chown -R root:root /​export/​apps/​R/​3.5 + 
-$ sudo yum remove gcc-gfortran gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel</​code>​+Then install some common libraries used by our users (to save space and time): 
r-software.txt · Last modified: 2019/10/27 18:44 by aorth