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quorum-software [2017/03/06 16:33] (current)
joguya created
Line 1: Line 1:
 +====== Quorum ======
  
 +Quorum (Quality Optimized Reads from the University of Maryland) is an error corrector for Illumina reads.
 +
 +===== Information =====
 +
 +  * Latest version: 1.1.1
 +  * Added: March, 2017
 +  * Link: https://​github.com/​gmarcais/​Quorum/​
 +
 +===== Usage =====
 +
 +See versions of Quorum which are available:
 +<​code>​$ module avail quorum</​code>​
 +
 +Load and run quorum:
 +<​code>​$ module load quorum
 +$ quorum --help
 +</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget -qO- https://​github.com/​gmarcais/​Quorum/​releases/​download/​v1.1.1/​quorum-1.1.1.tar.gz | tar xzv
 +$ cd quorum-1.1.1/​
 +$ scl enable devtoolset-3 bash
 +$ sudo mkdir -p /​export/​apps/​quorum/​1.1.1/​
 +$ sudo chown -R joguya:​joguya /​export/​apps/​quorum/​1.1.1/​
 +$ module load jellyfish/​2.2.6
 +$ PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/​export/​apps/​jellyfish/​2.2.6/​lib/​pkgconfig ./configure --prefix=/​export/​apps/​quorum/​1.1.1/​
 +$ make -j4
 +$ make install
 +$ sudo chown -R roo t:root /​export/​apps/​quorum/​1.1.1/​
 +</​code>​
quorum-software.txt · Last modified: 2017/03/06 16:33 by joguya