User Tools

Site Tools


quickmerge-software

quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Information

Usage

See versions of quickmerge which are available:

$ module avail quickmerge

Load one version into your environment and run it:

$ module load quickmerge/0.3
$ quickmerge
$ merge_wrapper.py

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/mahulchak/quickmerge/archive/v0.3.tar.gz
$ tar xf v0.3.tar.gz
$ cd quickmerge-0.3
$ scl enable devtoolset-7 bash
$ sudo mkdir -p /export/apps/quickmerge/0.3
$ sudo cp merge_wrapper.py merger/quickmerge /export/apps/quickmerge/0.3
quickmerge-software.txt · Last modified: 2019/10/01 18:07 by aorth