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qiime2-software [2018/07/22 19:21]
aorth
qiime2-software [2018/07/22 19:21] (current)
aorth
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 $ qiime --help</​code>​ $ qiime --help</​code>​
  
-Qiime2 has 240 dependencies and is extremely tricky to install without the use of [[https://​conda.io/​miniconda.html|Miniconda]] (it is not even published on PyPy anymore, so installing it with pip is not an option). +Qiime2 has 240 dependencies and is extremely tricky to install without the use of [[https://​conda.io/​miniconda.html|Miniconda]] (it is not even published on PyPy anymore, so installing it with pip is not an option). My strategy is to install Conda somewhere globally and then use it to install Qiime2. After the installation is done I think we don't technically need Conda itself anymore, but but I will keep it around for ease of upgrading and installing future versions.
- +
-My strategy is to install Conda somewhere globally and then use it to install Qiime2. After the installation is done I think we don't technically need Conda itself anymore, but but I will keep it around for ease of upgrading and installing future versions.+
  
 To create the [[https://​github.com/​ilri/​hpc-environment-modules/​tree/​master/​qiime2|modulefile]] I compared the output ''​env''​ before and after loading the Qiime2 environment with Conda. To create the [[https://​github.com/​ilri/​hpc-environment-modules/​tree/​master/​qiime2|modulefile]] I compared the output ''​env''​ before and after loading the Qiime2 environment with Conda.
qiime2-software.txt · Last modified: 2018/07/22 19:21 by aorth