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provean-software [2018/03/28 15:01] (current)
aorth created
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 +====== provean ======
 +PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.
  
 +===== Information =====
 +
 +  * Latest version: 1.1.5
 +  * Added: March, 2018
 +  * Link: http://​provean.jcvi.org/​index.php
 +
 +===== Usage =====
 +
 +See versions of provean which are available:
 +<​code>​module avail provean</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load provean/​1.1.5
 +$ provean</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​tenet.dl.sourceforge.net/​project/​provean/​provean-1.1.5.tar.gz
 +$ tar xf provean-1.1.5.tar.gz
 +$ cd provean-1.1.5
 +$ ./configure --prefix=/​export/​apps/​provean/​1.1.5 BLAST_DB=/​export/​data/​bio/​ncbi/​blast/​db/​nr PSIBLAST=/​export/​apps/​blast/​2.7.1+/​bin/​psiblast BLASTDBCMD=/​export/​apps/​blast/​2.7.1+/​bin/​blastdbcmd CDHIT=/​export/​apps/​cd-hit/​4.6.6/​cd-hit
 +$ make
 +$ sudo mkdir -p /​export/​apps/​provean/​1.1.5
 +$ sudo chown aorth /​export/​apps/​provean/​1.1.5
 +$ make install
 +$ sudo chown -R root:root /​export/​apps/​provean/​1.1.5</​code>​
provean-software.txt · Last modified: 2018/03/28 15:01 by aorth