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prokka-software [2017/02/20 14:19] (current)
joguya created
Line 1: Line 1:
 +====== PROKKA ======
 +
 +Prokka is a software tool for the rapid annotation of prokaryotic genomes.
 +
 +===== Information =====
 +
 +  * Version: 1.11
 +  * Added: February, 2017
 +  * Link: http://​www.vicbioinformatics.com/​software.prokka.shtml
 +
 +===== Usage =====
 +
 +See which versions of Prokka are available:
 +<​code>​$ module avail prokka</​code>​
 +
 +Load prokka
 +<​code>​$ module load prokka/​1.11</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp/
 +$ wget -qO- https://​github.com/​tseemann/​prokka/​archive/​v1.11.tar.gz | tar xzv
 +$ cd prokka-1.11/​
 +$ scl enable devtoolset-3 bash
 +$ module load perl/​5.22.3 ​
 +$ cpanm SWISS::​Entry SWISS::KW XML::Simple
 +$ sed -i '​s#/​usr/​bin/​perl.*#/​usr/​bin/​env perl#' bin/*
 +$ sudo mkdir -p /​export/​apps/​prokka/​1.11
 +$ sudo cp -rv . /​export/​apps/​prokka/​1.11/​
 +</​code>​
  
prokka-software.txt · Last modified: 2017/02/20 14:19 by joguya