User Tools

Site Tools


prokka-software

Table of Contents

PROKKA

Prokka is a software tool for the rapid annotation of prokaryotic genomes.

Information

Usage

See which versions of Prokka are available:

$ module avail prokka

Load prokka

$ module load prokka/1.11

Installation

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget -qO- https://github.com/tseemann/prokka/archive/v1.11.tar.gz | tar xzv
$ cd prokka-1.11/
$ scl enable devtoolset-3 bash
$ module load perl/5.22.3 
$ cpanm SWISS::Entry SWISS::KW XML::Simple
$ sed -i 's#/usr/bin/perl.*#/usr/bin/env perl#' bin/*
$ sudo mkdir -p /export/apps/prokka/1.11
$ sudo cp -rv . /export/apps/prokka/1.11/
prokka-software.txt · Last modified: 2017/02/20 14:19 by joguya