User Tools

Site Tools


prodigal-software

prodigal

Fast, reliable protein-coding gene prediction for prokaryotic genomes.

Information

Usage

See which versions of prodigal are available:

$ module avail prodigal

Load one version into your environment and run it:

$ module load prodigal/2.6.3
$ prodigal

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/hyattpd/Prodigal.git -b v2.6.3
$ cd Prodigal
$ scl enable devtoolset-7 bash
$ make -j4
$ sudo mkdir -p /export/apps/prodigal/2.6.3/bin
$ sudo cp LICENSE README.md /export/apps/prodigal/2.6.3
$ sudo cp prodigal /export/apps/prodigal/2.6.3/bin
prodigal-software.txt · Last modified: 2020/03/12 19:25 by aorth