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presto-software
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presto-software [2017/05/31 00:20] aorth |
presto-software [2020/03/15 14:54] (current) aorth |
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| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 0.5.3 | + | * Version: 0.5.13 |
| * Added: June, 2016 | * Added: June, 2016 | ||
| - | * Updated: May, 2017 | + | * Updated: March, 2020 |
| - | * Link: http://presto.readthedocs.io | + | * Link: https://presto.readthedocs.io |
| ===== Usage ===== | ===== Usage ===== | ||
| Line 15: | Line 15: | ||
| Load a version of presto into your environment: | Load a version of presto into your environment: | ||
| - | <code>$ module load presto/0.5.3</code> | + | <code>$ module load presto/0.5.13</code> |
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 21: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | <code>$ scl enable devtoolset-2 bash | + | <code>$ scl enable devtoolset-7 bash |
| - | $ module load python/3.4.3 | + | $ sudo mkdir -p /export/apps/presto/0.5.13 |
| - | $ sudo mkdir /export/apps/presto/0.5.3 | + | $ sudo chown aorth /export/apps/presto/0.5.13 |
| - | $ sudo chown aorth /export/apps/presto/0.5.3 | + | $ python3.6m -m venv /export/apps/presto/0.5.13 |
| - | $ python -m venv /export/apps/presto/0.5.3 | + | $ source /export/apps/presto/0.5.13/bin/activate |
| - | $ . /export/apps/presto/0.5.3/bin/activate | + | $ pip install --upgrade setuptools pip |
| - | $ pip install -U pip setuptools | + | |
| - | $ pip install -U Cython | + | |
| - | $ pip install -U numpy scipy pandas biopython | + | |
| $ pip install presto | $ pip install presto | ||
| - | $ sudo chown -R root:root /export/apps/presto/0.5.3</code> | + | $ sudo chown -R root:root /export/apps/presto/0.5.13</code> |
presto-software.1496179236.txt.gz · Last modified: 2017/05/31 00:20 by aorth
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