pRESTO is a toolkit for processing raw reads from high-throughput sequencing of lymphocyte repertoires.

• Version: 0.5.3
• Added: June, 2016
• Updated: May, 2017
• Link: http://presto.readthedocs.io

See which versions of presto are available:

$ module avail presto

Load a version of presto into your environment:

$ module load presto/0.5.3

Notes from the sysadmin during installation:

$ scl enable devtoolset-2 bash
$ module load python/3.4.3
$ sudo mkdir /export/apps/presto/0.5.3
$ sudo chown aorth /export/apps/presto/0.5.3
$ python -m venv /export/apps/presto/0.5.3
$ . /export/apps/presto/0.5.3/bin/activate
$ pip install -U pip setuptools
$ pip install -U Cython
$ pip install -U numpy scipy pandas biopython
$ pip install presto
$ sudo chown -R root:root /export/apps/presto/0.5.3