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presto-software

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pRESTO

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of lymphocyte repertoires.

Information

Usage

See which versions of presto are available:

$ module avail presto

Load a version of presto into your environment:

$ module load presto/0.5.3

Installation

Notes from the sysadmin during installation:

$ scl enable devtoolset-2 bash
$ module load python/3.4.3
$ sudo mkdir /export/apps/presto/0.5.3
$ sudo chown aorth /export/apps/presto/0.5.3
$ python -m venv /export/apps/presto/0.5.3
$ . /export/apps/presto/0.5.3/bin/activate
$ pip install -U pip setuptools
$ pip install -U Cython
$ pip install -U numpy scipy pandas biopython
$ pip install presto
$ sudo chown -R root:root /export/apps/presto/0.5.3
presto-software.txt · Last modified: 2017/05/31 00:20 by aorth