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pplacer-software [2020/03/12 17:57] (current)
aorth created
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 +====== pplacer ======
  
 +Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty,​ and to offer advanced visualization and downstream analysis.
 +
 +===== Information =====
 +
 +  * Version: 1.1.alpha19
 +  * Added: March, 2020
 +  * Link: https://​matsen.fhcrc.org/​pplacer/​
 +
 +===== Usage =====
 +
 +See which versions of pplacer are available:
 +<​code>​$ module avail pplacer</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load pplacer/​1.1.alpha19
 +$ pplacer
 +$ guppy
 +$ rppr</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​matsen/​pplacer/​releases/​download/​v1.1.alpha19/​pplacer-linux-v1.1.alpha19.zip
 +$ unzip pplacer-linux-v1.1.alpha19.zip
 +$ sudo mkdir -p /​export/​apps/​pplacer
 +$ sudo cp -r pplacer-Linux-v1.1.alpha19 /​export/​apps/​pplacer/​1.1.alpha19</​code>​
pplacer-software.txt · Last modified: 2020/03/12 17:57 by aorth