PLINK is a whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

• Version: 2.00-alpha (Nov 28, 2019)
• Added: October, 2011
• Updated: December, 2019
• Link: https://www.cog-genomics.org/plink/2.0/

See versions of plink which are available:

$ module avail plink

Load one version into your environment and run it:

$ module load plink/2.00-alpha
$ plink2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_20191128.zip
$ sudo mkdir /export/apps/plink/2.00-alpha
$ sudo cp plink2 /export/apps/plink/2.00-alpha

The AVX2 build only runs on one of our compute nodes because the rest are too old. We need to use the less-optimized 64-bit builds. :(