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plink-software [2015/12/01 17:10]
joguya
plink-software [2019/12/09 12:10] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: ​1.+  * Version: ​2.00-alpha (Nov 282019)
-  * Updated: November2015+
   * Added: October, 2011   * Added: October, 2011
-  * Link: https://​www.cog-genomics.org/​plink2/+  ​* Updated: December, 2019 
 +  ​* Link: https://​www.cog-genomics.org/​plink/2.0/
  
 ===== Usage ===== ===== Usage =====
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 <​code>​$ module avail plink</​code>​ <​code>​$ module avail plink</​code>​
  
-Load and run plink+Load one version into your environment ​and run it
-<​code>​$ module load plink/1.9 +<​code>​$ module load plink/2.00-alpha 
-plink</​code>​+plink2</​code>​ 
 + 
 +**Note:** If you are running your job on a newer compute node like compute05 you can run ''​plink2-avx2''​ instead of ''​plink2''​ as that server has a newer CPU and can use a more optimized plink.
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget https://www.cog-genomics.org/static/​bin/​plink151123/plink_linux_x86_64.zip +$ wget http://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_20191128.zip 
-$ mkdir plink-1.90 +sudo mkdir /​export/​apps/​plink/2.00-alpha 
-cd plink-1.90 +sudo cp plink2 /​export/​apps/​plink/2.00-alpha 
-unzip ../plink_linux_x86_64.zip +rm plink2 
-sudo mkdir /​export/​apps/​plink/​1.9 +$ wget http://s3.amazonaws.com/​plink2-assets/plink2_linux_avx2_20191128.zip 
-$ sudo cp /​export/​apps/​plink/​1.+unzip plink2_linux_avx2_20191128.zip 
-</​code>​+$ sudo cp plink2 ​/​export/​apps/​plink/​2.00-alpha/​plink2-avx2</​code>​ 
 + 
 +The AVX2 build only runs on compute05. The rest of our compute nodes are too old and must use the 64-bit builds.
plink-software.1448979058.txt.gz · Last modified: 2015/12/01 17:10 by joguya