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pilon-software [2018/11/18 09:51]
aorth
pilon-software [2019/02/15 12:14] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.2.2+  * Version: 1.23
   * Added: November, 2018   * Added: November, 2018
 +  * Updated: February, 2019
   * Link: https://​github.com/​broadinstitute/​pilon/​wiki   * Link: https://​github.com/​broadinstitute/​pilon/​wiki
  
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 Pilon is distributed as a Java JAR file. You need to run it like this: Pilon is distributed as a Java JAR file. You need to run it like this:
-<​code>​$ java -Xmx16G ​-jar /​export/​apps/​pilon/​1.2.2/pilon-1.22.jar</​code>​+<​code>​$ java -Xmx8G -jar /​export/​apps/​pilon/​1.23/pilon-1.23.jar</​code>​
  
-The [[https://​github.com/​broadinstitute/​pilon/​wiki/​Requirements-&​-Usage|documentation recommends]] using a minimum of 8GB of memory, or 16GB if possible.+The [[https://​github.com/​broadinstitute/​pilon/​wiki/​Requirements-&​-Usage|documentation recommends]] using a minimum of 8GB of memory, or 16GB if possible. As a rule of thumb, try to allocate 1GB of memory per megabase of input genome to be processed.
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ sudo mkdir -p /​export/​apps/​pilon/​1.2.2 +<​code>​$ sudo mkdir -p /​export/​apps/​pilon/​1.23 
-$ sudo wget https://​github.com/​broadinstitute/​pilon/​releases/​download/​v1.22/pilon-1.22.jar -O /​export/​apps/​pilon/​1.2.2/pilon-1.22.jar</​code>​+$ sudo wget https://​github.com/​broadinstitute/​pilon/​releases/​download/​v1.23/pilon-1.23.jar -O /​export/​apps/​pilon/​1.23/pilon-1.23.jar</​code>​
pilon-software.1542523860.txt.gz · Last modified: 2018/11/18 09:51 by aorth