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picard-software [2017/12/26 12:50]
aorth
picard-software [2017/12/26 12:55] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 2.8.2+  * Version: 2.17.0
   * Added: March, 2015   * Added: March, 2015
-  * Updated: ​February, 2017+  * Updated: ​December, 2017
   * Link: https://​broadinstitute.github.io/​picard   * Link: https://​broadinstitute.github.io/​picard
  
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 Load and run picard: Load and run picard:
-<​code>​$ module load picard/2.8.2+<​code>​$ module load picard/2.17.0
 $ picard</​code>​ $ picard</​code>​
  
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ ​cd /tmp +<​code>​$ ​sudo mkdir -p /​export/​apps/picard/​2.17.0 
-$ wget https://​github.com/​broadinstitute/​picard/​releases/​download/​2.8.2/picard-2.8.2.jar +$ wget https://​github.com/​broadinstitute/​picard/​releases/​download/​2.17.0/​picard.jar 
-$ sudo cp picard-2.8.2.jar /​export/​apps/​picard/​2.8.2/</​code>​+$ sudo cp picard.jar /​export/​apps/​picard/​2.17.0</​code>​
  
 I created a generic ''​picard''​ wrapper for picard tools, as it must otherwise be run with ''​java -jar ..''​ and is rather user-unfriendly. I created a generic ''​picard''​ wrapper for picard tools, as it must otherwise be run with ''​java -jar ..''​ and is rather user-unfriendly.
  
-///​export/​apps/​picard/​2.8.2/picard//:+///​export/​apps/​picard/​2.17.0/picard//:
  
 <​code>#​!/​usr/​bin/​env bash <​code>#​!/​usr/​bin/​env bash
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 readonly PREFIX=$(dirname $0) readonly PREFIX=$(dirname $0)
  
-java -jar $PREFIX/​picard.jar $* +java -jar $PREFIX/​picard.jar $*</​code>​
-</​code>​+
picard-software.txt · Last modified: 2017/12/26 12:55 by aorth