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picard-software [2017/12/26 09:50]
aorth
picard-software [2017/12/26 09:55] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 2.8.2+  * Version: 2.17.0
   * Added: March, 2015   * Added: March, 2015
-  * Updated: February, 2017+  * Updated: December, 2017
   * Link: https://broadinstitute.github.io/picard   * Link: https://broadinstitute.github.io/picard
  
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 Load and run picard: Load and run picard:
-<code>$ module load picard/2.8.2+<code>$ module load picard/2.17.0
 $ picard</code> $ picard</code>
  
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>cd /tmp +<code>sudo mkdir -p /export/apps/picard/2.17.0 
-$ wget https://github.com/broadinstitute/picard/releases/download/2.8.2/picard-2.8.2.jar +$ wget https://github.com/broadinstitute/picard/releases/download/2.17.0/picard.jar 
-$ sudo cp picard-2.8.2.jar /export/apps/picard/2.8.2/</code>+$ sudo cp picard.jar /export/apps/picard/2.17.0</code>
  
 I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly. I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
  
-///export/apps/picard/2.8.2/picard//:+///export/apps/picard/2.17.0/picard//:
  
 <code>#!/usr/bin/env bash <code>#!/usr/bin/env bash
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 readonly PREFIX=$(dirname $0) readonly PREFIX=$(dirname $0)
  
-java -jar $PREFIX/picard.jar $* +java -jar $PREFIX/picard.jar $*</code>
-</code>+
picard-software.1514281818.txt.gz · Last modified: 2017/12/26 09:50 by aorth