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--- picard-software [2017/02/06 07:50]
joguya old revision restored (2017/02/05 16:18)
+++ picard-software [2017/12/26 09:55] (current)
aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 2.8.2
+  * Version: 2.17.0
   * Added: March, 2015
-  * Updated: February, 2017
+  * Updated: December, 2017
   * Link: https://broadinstitute.github.io/picard
 ===== Usage =====
 See versions of picard which are available:
 <code>$ module avail picard</code>
 Load and run picard:
-<code>$ module load picard/2.8.2
+<code>$ module load picard/2.17.0
 $ picard</code>
@@ Line 23: / Line 22: @@
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ sudo mkdir -p /export/apps/picard/2.17.0
-$ wget https://github.com/broadinstitute/picard/releases/download/2.8.2/picard-2.8.2.jar
+$ wget https://github.com/broadinstitute/picard/releases/download/2.17.0/picard.jar
-$ sudo cp picard-2.8.2.jar /export/apps/picard/2.8.2/
+$ sudo cp picard.jar /export/apps/picard/2.17.0</code>
-</code>
 I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
-/export/apps/picard/2.8.2/picard<code>#!/usr/bin/env bash
+///export/apps/picard/2.17.0/picard//:
+<code>#!/usr/bin/env bash
 readonly PREFIX=$(dirname $0)
-java -jar $PREFIX/picard.jar $*
+java -jar $PREFIX/picard.jar $*</code>
-</code>

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