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picard-software [2015/06/10 12:25]
joguya 		picard-software [2017/12/26 09:55] (current)
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.133+  * Version: 2.17.0
   * Added: March, 2015   * Added: March, 2015
-  * Updated: June, 2015+  * Updated: December, 2017
   * Link: https://broadinstitute.github.io/picard   * Link: https://broadinstitute.github.io/picard
  
 ===== Usage ===== ===== Usage =====
- 
 See versions of picard which are available: See versions of picard which are available:
 <code>$ module avail picard</code> <code>$ module avail picard</code>
  
 Load and run picard: Load and run picard:
-<code>$ module load picard/1.133+<code>$ module load picard/2.17.0
 $ picard</code> $ picard</code>
  
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ cd /tmp +<code>$ sudo mkdir -p /export/apps/picard/2.17.0 
-$ wget https://github.com/broadinstitute/picard/releases/download/1.133/picard-tools-1.133.zip +$ wget https://github.com/broadinstitute/picard/releases/download/2.17.0/picard.jar 
-$ unzip picard-tools-1.133.zip +$ sudo cp picard.jar /export/apps/picard/2.17.0</code> 
-$ cd picard-tools-1.133 + 
-$ sudo mkdir /export/apps/picard/1.133 +I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly. 
-$ sudo cp -rv * /export/apps/picard/1.133 + 
-</code>+///export/apps/picard/2.17.0/picard//:
  
-I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather unfriendly.<code>#!/usr/bin/env bash+<code>#!/usr/bin/env bash
  
 readonly PREFIX=$(dirname $0) readonly PREFIX=$(dirname $0)
  
-java -jar $PREFIX/picard.jar $* +java -jar $PREFIX/picard.jar $*</code>
-</code>+
picard-software.1433939120.txt.gz · Last modified: 2015/06/10 12:25 by joguya

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