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--- picard-software [2015/06/09 16:35]
aorth
+++ picard-software [2017/12/26 09:55] (current)
aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.129
+  * Version: 2.17.0
   * Added: March, 2015
+  * Updated: December, 2017
   * Link: https://broadinstitute.github.io/picard
 ===== Usage =====
 See versions of picard which are available:
 <code>$ module avail picard</code>
 Load and run picard:
-<code>$ module load picard/1.129
+<code>$ module load picard/2.17.0
 $ picard</code>
@@ Line 22: / Line 22: @@
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ sudo mkdir -p /export/apps/picard/2.17.0
-$ https://github.com/broadinstitute/picard/releases/download/1.129/picard-tools-1.129.zip
+$ wget https://github.com/broadinstitute/picard/releases/download/2.17.0/picard.jar
-$ unzip picard-tools-1.129.zip
+$ sudo cp picard.jar /export/apps/picard/2.17.0</code>
-$ cd picard-tools-1.129
-$ sudo mkdir -p /export/apps/picard/1.129
+I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
-$ sudo cp -rv * /export/apps/picard/1.129</code>
+///export/apps/picard/2.17.0/picard//:
+<code>#!/usr/bin/env bash
+readonly PREFIX=$(dirname $0)
-I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather unfriendly.
+java -jar $PREFIX/picard.jar $*</code>

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