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Picard tools

A set of Java command line tools for manipulating high-throughput sequencing data (HTS) data and formats.

Information

Version: 1.129
Added: March, 2015
Link: https://broadinstitute.github.io/picard

Usage

See versions of picard which are available

$ module avail picard

Load and run picard

$ module load picard/1.129
$ picard

Note: Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ https://github.com/broadinstitute/picard/releases/download/1.129/picard-tools-1.129.zip
$ unzip picard-tools-1.129.zip
$ cd picard-tools-1.129
$ sudo mkdir -p /export/apps/picard/1.129
$ sudo cp -rv * /export/apps/picard/1.129

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Table of Contents

Picard tools

Information

Usage

See versions of picard which are available

Load and run picard

Note: Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite

Installation

ILRI Research Computing

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Sidebar

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Table of Contents

Picard tools

Information

Usage

See versions of picard which are available

Load and run picard

Note: Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite

Installation

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