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pear-software [2016/09/20 12:41] (current)
joguya created
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 +====== PEAR ======
 +
 +PEAR assembles Illumina paired-end reads if the DNA fragment sizes are smaller than twice the length of reads.
 +
 +===== Information =====
 +
 +  * Version: git-2c309dc
 +  * Added: September, 2016
 +  * Link: https://​github.com/​xflouris/​PEAR
 +
 +===== Usage =====
 +
 +See which versions of pear are available:
 +<​code>​$ module avail pear</​code>​
 +
 +Load pear
 +<​code>​$ module load pear</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +<​code>​
 +$ cd /tmp
 +$ git clone https://​github.com/​xflouris/​PEAR.git
 +$ sudo mkdir -p /​export/​apps/​pear/​git-2c309dc
 +$ sudo chown -R joguya:​joguya /​export/​apps/​pear/​git-2c309dc
 +$ scl enable devtoolset-2 bash
 +$ ./​autogen.sh ​
 +$ ./configure --disable-zlib --prefix=/​export/​apps/​pear/​git-2c309dc
 +$ make
 +$ make install
 +$ sudo chown -R root:root /​export/​apps/​pear/​git-2c309dc
 +</​code>​
  
pear-software.txt · Last modified: 2016/09/20 12:41 by joguya