User Tools

Site Tools


pear-software

Table of Contents

PEAR

PEAR assembles Illumina paired-end reads if the DNA fragment sizes are smaller than twice the length of reads.

Information

Usage

See which versions of pear are available:

$ module avail pear

Load pear

$ module load pear

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/xflouris/PEAR.git
$ sudo mkdir -p /export/apps/pear/git-2c309dc
$ sudo chown -R joguya:joguya /export/apps/pear/git-2c309dc
$ scl enable devtoolset-2 bash
$ ./autogen.sh 
$ ./configure --disable-zlib --prefix=/export/apps/pear/git-2c309dc
$ make
$ make install
$ sudo chown -R root:root /export/apps/pear/git-2c309dc
pear-software.txt · Last modified: 2016/09/20 12:41 by joguya