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pbsuite-software [2017/09/30 09:35]
aorth
pbsuite-software [2017/09/30 09:35] (current)
aorth [Installation]
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 Note: the [[https://​sourceforge.net/​p/​pb-jelly/​wiki/​Home/​|PBJelly wiki readme]] says to install networkx 1.1, but then the included readme says to use 1.7. Note: the [[https://​sourceforge.net/​p/​pb-jelly/​wiki/​Home/​|PBJelly wiki readme]] says to install networkx 1.1, but then the included readme says to use 1.7.
  
-Also note: PBSuite is very old and uses incompatible command-line options for modern versions of blasr. You need to make sure you're using long-form options like ''​--sa''​ and ''​--out''​ instead of ''​-sa''​ and ''​-out''​. See [[this thread|https://​sourceforge.net/​p/​pb-jelly/​discussion/​pbjtiks/​thread/​7657e087/​]] on the PBSuite discussion board.+Also note: PBSuite is very old and uses incompatible command-line options for modern versions of blasr. You need to make sure you're using long-form options like ''​--sa''​ and ''​--out''​ instead of ''​-sa''​ and ''​-out''​. See [[https://​sourceforge.net/​p/​pb-jelly/​discussion/​pbjtiks/​thread/7657e087/|https://​sourceforge.net/​p/​pb-jelly/​discussion/​pbjtiks/​thread/​7657e087/​]] on the PBSuite discussion board.
pbsuite-software.txt · Last modified: 2017/09/30 09:35 by aorth