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--- pasa [2009/08/19 13:27]
172.26.0.166
+++ pasa [2010/05/22 14:19] (current)
@@ Line 1: / Line 1: @@
-==== Program for Automated Sequential Assignment =====
+===== Program for Automated Sequential Assignment =====
-http://pasa.sourceforge.net/
+  * http://pasa.sourceforge.net/
-http://www.lerner.ccf.org/moleccard/qin/pasa/
+==== Setting Up the PASA Web Portal ====
+From the PASA sourceforge documentation:
+(optional, but highly recommended)
+Recursively copy (cp -r) the $PASAHOME area to the cgi-bin directory of your webserver. Change permissions on everything so that it is world executable (ie. % chmod -R 755 ./PASA ) Now, visit the URL for the status report page for the pasa database you created during the pasa run above.
+http://yourServerName/cgi-bin/PASA/cgi-bin/status_report.cgi?db=$mysqldb
+This will provide some summary statistics and links to additional web-based utilities for navigating the results from your pasa run.
+Now that you have a URL for your base PASA url, update your original configuration file at: $PASAHOME/pasa_conf/conf.txt to set the value of BASE_PASA_URL=http://yourServerName/cgi-bin/PASA/cgi-bin/
+===== Status =====
+PASA is installed and there is a web interface currently running here:
+  * http://hpc.ilri.cgiar.org/cgi-bin/PASA/cgi-bin/status_report.cgi?db=pasa_tp_mar
+  * http://hpc.ilri.cgiar.org/cgi-bin/PASA/cgi-bin/status_report.cgi?db=pasa_tp_mar_chr2
+  * http://hpc.ilri.cgiar.org/cgi-bin/PASA/cgi-bin/status_report.cgi?db=pasa_tp_mar_chr3_530
+  * http://hpc.ilri.cgiar.org/cgi-bin/PASA/cgi-bin/status_report.cgi?db=pasa_tp_mar_chr3_531
+  * http://hpc.ilri.cgiar.org/cgi-bin/PASA/cgi-bin/status_report.cgi?db=sample_mydb_pasa
+I'm not sure if there is other functionality, such as a "start page" or the like.

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