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De novo transcriptome assembler for very short reads.
When used in conjunction with one another, Velvet and Oases must be appropriately matched by version/release, and also, based upon the value of MAXKMERLENGTH (the maximum hash length) and CATEGORIES (the number of short read categories), which should also be matched during respective builds.
Notes from the sysadmin during installation:
wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz tar zxf velvet_1.2.10.tgz wget https://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz tar zxf oases_0.2.08.tgz cd oases_0.2.08 scl enable devtoolset-1.1 bash make 'VELVET_DIR=../velvet_1.2.10' sudo mkdir -p /export/apps/oases/0.2.08/bin sudo cp oases scripts/oases_pipeline.py /export/apps/oases/0.2.08/bin/ sudo cp OasesManual.pdf /export/apps/oases/0.2.08/