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oases-software

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Table of Contents

Oases

De novo transcriptome assembler for very short reads.

Information

Usage

Installation

Notes from the sysadmin during installation:

wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
tar zxf velvet_1.2.10.tgz
wget https://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz
tar zxf oases_0.2.08.tgz
cd oases_0.2.08
scl enable devtoolset-1.1 bash
make 'VELVET_DIR=../velvet_1.2.10'
sudo mkdir -p /export/apps/oases/0.2.08/bin
sudo cp oases scripts/oases_pipeline.py /export/apps/oases/0.2.08/bin/
sudo cp OasesManual.pdf /export/apps/oases/0.2.08/
oases-software.1401183524.txt.gz · Last modified: 2014/05/27 09:38 by aorth